You can configure your server files path in Application Builder>Application>Shared Components>Edit Application Definition>User Interface by editing “Image prefix” option.
So it’s better idea to use universal:
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<script type=“text/javascript” src=“#IMAGE_PREFIX#jQuery/js/jquery-1.4.2.min.js”></script>
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than hardcoded:
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<script type=“text/javascript” src=“/i/jQuery/js/jquery-1.4.2.min.js”></script>
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Remember also about difference between three substitution strings for files in Oracle Application Express: